rs31836137 SNP Detail

Summary

• ID
  rs31836137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99773994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAAGGT GTGAGGGCTC
  GGGAAGGCTG GGGGCTACCG CTGGGGAGCC GGGAAGCAAA GAGCGGCTCA AGCCGGGAGG
  GATGGAGCCC AGGGGGCTAT GCAGCACCCC TGTCAGATTC CCTGCTCCGG GTCTTTCAGA
  CTGGCCAGAT CCTGATTCCA TCTTCCAGGC AACTCTTGAG GGAGGTAGGA CTCTGGAAAT
  Y
  TGGGGTGCCC GGGTATGACC CTAGACGAAG CAAGGGATGT GGATTGGTGC TCAGGGCAGG
  ATACTGTAGC CCAGTTCCGG GATGGGGAGA AGCAGGGGCC TCTCTTTGGG TTGACCAGTC
  AGTATAGTGG GAAGGGACCC AGCTCCCACC CCTCCACTAC CTAGACGGGA CCCTCCTTTC
  CTAAGGAGAA TTTATTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780383	NES12397642	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31836137					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780383	NES12397642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99773994 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	within coordinates
Gm52438	predicted gene, 52438	1227 bp upstream
Rr692772	regulatory region 692772	192 bp distal
Rr692773	regulatory region 692773	289 bp distal
Rr692774	regulatory region 692774	within coordinates
Tssr161618	transcription start site region 161618	565 bp downstream
Tssr161619	transcription start site region 161619	542 bp downstream
Tssr161620	transcription start site region 161620	425 bp downstream
Tssr161621	transcription start site region 161621	394 bp downstream
Tssr161622	transcription start site region 161622	266 bp downstream
Tssr161623	transcription start site region 161623	247 bp downstream
Tssr161624	transcription start site region 161624	221 bp downstream
Tssr161625	transcription start site region 161625	199 bp downstream