rs31836138 SNP Detail

Summary

• ID
  rs31836138
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCTTTT CCGTTTACAG
  AACAAAACTA CTGCCCCCTT GCTTTCTCCC TTAAAAAGGA AGTGGGGGGG GGGGGACAAG
  GATTATTCCT TACCTTATGC CAGATTTCTT GTCTCCAGTT AGAAGCCAGA AGGGGGGCCA
  GCCATGCAGT ACCTCATACA GGCTATATTT GAAACCTTTT GGGAGTTTGC AAGCCTTGAG
  K
  CTCATCCATG CATATCGAAT GCTGTCCCCA CCCCACCACC CCCAAAAGGC TCTCAAACCA
  TCCCCACGTA CAAGAAAACA AGACTCTAGA ATCCACCACA ACCCAAGCAA AGGAAATTGA
  AAAACAACCT GCCAAGAATG ACTCCCAGTG GAGGACTAGG TGACCCGCTG GCCCTCCCTG
  GCTTCCTGCC AGCAAGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780384	NES12397638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31836138					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780384	NES12397638	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772470 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1009 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1592 bp downstream
Rr692772	regulatory region 692772	588 bp proximal
Rr692773	regulatory region 692773	1197 bp proximal
Rr692774	regulatory region 692774	1333 bp proximal
Tssr161618	transcription start site region 161618	954 bp upstream
Tssr161619	transcription start site region 161619	972 bp upstream
Tssr161620	transcription start site region 161620	1053 bp upstream
Tssr161621	transcription start site region 161621	1116 bp upstream
Tssr161622	transcription start site region 161622	1255 bp upstream
Tssr161623	transcription start site region 161623	1262 bp upstream
Tssr161624	transcription start site region 161624	1292 bp upstream
Tssr161625	transcription start site region 161625	1314 bp upstream