rs31836139 SNP Detail

Summary

• ID
  rs31836139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTATAAAG TTTTCCCCAA
  CCTCCCAAAT TGTACCACAG GCCAGGGAAC AAGCTGTGAA CACACAAGCC CTTGGGGAAC
  ATTAAATATC TAACAGAGAT AGTACCGTGG TACAAAGAGG TGGTTATATA GAGTTACAAT
  GTCAGTGAAT ATTAGAGCTG GGAACAGAAG CCAGTTACAT TTACCATATA GTTCTTTCTA
  R
  TGCCCTGCAA TCCTACTAAT GCTTTTCCGT TTACAGAACA AAACTACTGC CCCCTTGCTT
  TCTCCCTTAA AAAGGAAGTG GGGGGGGGGG GACAAGGATT ATTCCTTACC TTATGCCAGA
  TTTCTTGTCT CCAGTTAGAA GCCAGAAGGG GGGCCAGCCA TGCAGTACCT CATACAGGCT
  ATATTTGAAA CCTTTTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780385	NES12397637	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31836139					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780385	NES12397637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772253 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1226 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1375 bp downstream
Rr692772	regulatory region 692772	805 bp proximal
Rr692773	regulatory region 692773	1414 bp proximal
Rr692774	regulatory region 692774	1550 bp proximal
Tssr161618	transcription start site region 161618	1171 bp upstream
Tssr161619	transcription start site region 161619	1189 bp upstream
Tssr161620	transcription start site region 161620	1270 bp upstream
Tssr161621	transcription start site region 161621	1333 bp upstream
Tssr161622	transcription start site region 161622	1472 bp upstream
Tssr161623	transcription start site region 161623	1479 bp upstream
Tssr161624	transcription start site region 161624	1509 bp upstream
Tssr161625	transcription start site region 161625	1531 bp upstream