rs31836141 SNP Detail

Summary

• ID
  rs31836141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAGTGT CTGCTTTACC
  ATACAATAGC AAATACTTGA GAGATGGAGT TGACTGGAGA ATGTGTTTAA TTTAGCTCAT
  GGTTTTGGAG GCCCTGGGCC ATGCTTAGAA ACCCATATTA GATCATGACA GAAGTACGAT
  GGAGCAGGAT GGGAGAAAAT AGTGGAAGGA TCTGGGTCCC ATCACCAGCC TTCGAGAGCA
  Y
  ACTCTCCAGT ATACAAAAGA CAGACACTCC ACGAGAACCT ACCTCGCTAT AAAGTTTTCC
  CCAACCTCCC AAATTGTACC ACAGGCCAGG GAACAAGCTG TGAACACACA AGCCCTTGGG
  GAACATTAAA TATCTAACAG AGATAGTACC GTGGTACAAA GAGGTGGTTA TATAGAGTTA
  CAATGTCAGT GAATATTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780387	NES12397635	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31836141					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780387	NES12397635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772008 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1471 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1130 bp downstream
Rr692772	regulatory region 692772	1050 bp proximal
Rr692773	regulatory region 692773	1659 bp proximal
Rr692774	regulatory region 692774	1795 bp proximal
Tssr161618	transcription start site region 161618	1416 bp upstream
Tssr161619	transcription start site region 161619	1434 bp upstream
Tssr161620	transcription start site region 161620	1515 bp upstream
Tssr161621	transcription start site region 161621	1578 bp upstream
Tssr161622	transcription start site region 161622	1717 bp upstream
Tssr161623	transcription start site region 161623	1724 bp upstream
Tssr161624	transcription start site region 161624	1754 bp upstream
Tssr161625	transcription start site region 161625	1776 bp upstream