rs31836179 SNP Detail

Summary

• ID
  rs31836179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149761235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA GTAGTGTCAA GTTGAGGGGG
  R
  AAAACAAAAC AACAAAAATC AACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45576622	mCV24219647	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148037757	ENSMUSSNP6372445	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321426417	CHEV_4_149050887	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31836179					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149761235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15330	CpG island 15330	373 bp distal
Pik3cd	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	within coordinates
Rr605004	regulatory region 605004	745 bp distal
Rr605005	regulatory region 605005	244 bp distal
Tssr44666	transcription start site region 44666	713 bp upstream
Tssr44667	transcription start site region 44667	654 bp upstream