rs31836615 SNP Detail

Summary

• ID
  rs31836615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172042032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGC GCACTGGAGG ATGGTTAATA
  R
  TATCTCTGGC CTCTAATTAC TGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45075274	mCV23614838	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120007502	PARCsnp_1.17829	PARC_SEQ	INBRED	f	SNP			G	A
ss120010413	PARCsnp_1.07474	PARC_SEQ	INBRED	f	SNP			G	A
ss146184100	ENSMUSSNP6673584	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320123275	CHEV_1_174144596	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31836615					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172042032 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	779 bp downstream
Rr423487	regulatory region 423487	459 bp distal
Tssr15176	transcription start site region 15176	1390 bp upstream
Tssr15177	transcription start site region 15177	1336 bp upstream
Tssr15178	transcription start site region 15178	1303 bp upstream
Tssr15179	transcription start site region 15179	1287 bp upstream
Tssr15180	transcription start site region 15180	1067 bp upstream
Tssr15181	transcription start site region 15181	504 bp upstream
Tssr15182	transcription start site region 15182	575 bp downstream
Tssr15183	transcription start site region 15183	1516 bp downstream