rs31837021 SNP Detail

Summary

• ID
  rs31837021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124794276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTAAGAA ATAAAACCCC
  CAGTCTCACA GGAAGATCCT AACTAAAATC CTGTAAGTAC ATTTTCATTG TTTTCATTAG
  CTGTGTGGGA AAGTGAAAGG ATGCCATACA GATGAACTAA TAGCTCTGCA CACATGGACT
  CAGTAGAGAC CAAAGGAAGA ACCAGTCTGC TCTAAAACGA ATGCATTCCT TGTCTGATGA
  Y
  TACCTCATGC TAGCTTGTGT GGACTCAGGG TATCACTGGG TCACTTCCCA GTTCACCACA
  GAGACAGATC CTGCCCACTA AAGCCCTGGA TTAGAAACCT GACATTTTGC CTCCTTTTGG
  AAATAATCGC CAGGAGAACC CAAGGATGAC ATTCTTTGTA GACTTGAGAA CAAAACTTCT
  AGCTCTTGCC TTTCATTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47594323	NES11184795	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31837021					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47594323	NES11184795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124794276 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	292 bp distal
Tssr80018	transcription start site region 80018	749 bp downstream
Tssr80019	transcription start site region 80019	741 bp downstream
Tssr80020	transcription start site region 80020	398 bp downstream