rs31837222 SNP Detail

Summary

• ID
  rs31837222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156738830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCACAGGT CATTGCTGAG TTTCCCAGAT
  ACCACTATGC TGTTACTTCT TGACTCATCA AGTCATGCTT CAGTTGCTCT GACTAGGGAA
  GCCTCTAGGC TTCAATCTAA CAACAAGGTT TCAGTTTCTG TTGCCTCTCC ATCTTCACTC
  Y
  AGCTGCAGTT ACACAGTTTA TTCTAGTTTG AAGTTTATAG AGAAAACTTT CAGTTTGTAC
  TGTTGGCTTT TATTCTTCAA CACCAGTAAC TGTCAGCCTC ACTCTGCTGC ATGTATTTAA
  TAATAAATGT ATACTATTCA GTAGCCAACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45076395	mCV23082992	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss145809053	ENSMUSSNP663636	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
ss320073033	CHEV_1_158841391	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31837222					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156738830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr396428	regulatory region 396428			within coordinates
Rr421275	regulatory region 421275			1173 bp distal
Rr421276	regulatory region 421276			within coordinates