rs31838359 SNP Detail

Summary

• ID
  rs31838359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36395159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAAGGG AGAGGGAAGC ATCCTTTGGG CGAACTCCCG
  GTGCGTGGTA CCCAGCGCTA TGAACACGTC GCCGCCGCCG GCGTGCCTAG ATGGGCTCTC
  Y
  CCGCTTTGAA TGTAAGCCAG ACCTTCTGGG TCTGACCTCC AGGGACAACG ACCCTCCTTC
  AGGTCAGAGG GGCGCCGCGG CCACCTGAAC CGTAAGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46074512	mCV25433239	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148848949	ENSMUSSNP6027034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss322166722	CHEV_7_37480753	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31838359					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36395159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	1216 bp distal
Cpgi18884	CpG island 18884	within coordinates
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	within coordinates
Gm72509	predicted gene, 72509	908 bp upstream
Rr645553	regulatory region 645553	1772 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	178 bp proximal
Rr645556	regulatory region 645556	1894 bp proximal
Tssr65916	transcription start site region 65916	892 bp upstream
Tssr72063	transcription start site region 72063	336 bp downstream