rs31839466 SNP Detail

Summary

• ID
  rs31839466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79976572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG AGCCTGCATT GGTGACACGG
  R
  TCACGGACCC CTGGGGGCTA ATAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39331266	mCV22873938	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148213553	ENSMUSSNP3158728	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325030244	CHEV_15_79922801	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31839466					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79976572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	177 bp distal
Gm31134	predicted gene, 31134	537 bp upstream
Rr312104	regulatory region 312104	within coordinates
Syngr1	synaptogyrin 1	within coordinates
Tssr132156	transcription start site region 132156	1164 bp downstream
Tssr132157	transcription start site region 132157	981 bp downstream
Tssr135418	transcription start site region 135418	531 bp upstream