rs31839774 SNP Detail

Summary

• ID
  rs31839774
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98502649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCAGGC CAGCTACTTT
  CAGCCTGGAG GCCTTGAGCC TTTCTTCTCT CGGTGCCTGG CTGCAAGTGA GAAACTGATG
  TGGCAGCCAT GTCTAATCAG GCAGGGGCCC CAAGAGACAG AGGCTCCTTC ATCTCAGCCT
  GAGGAGGGGT CAGTCTGGGG CTCTGGGAGG AGCCTGAGGA GACACTGAGC CCATGCAGCC
  K
  GGTCCAGCCC ACATTCCTCA GCTGGCCTTG GTGTAGTGAG CATGCTCGAT GCTCAACCGG
  AAGCTAAGCC CTGCACCAGG AGCCTTAGCT GCCATCTGTG CCTGCAGACT CTGGTGAGTG
  AGCAGAGGGG CTCAGGCAAC AGTCAATTCC ACGGGAGGGG GGATACTCTG CTTCTTCATC
  CTCCTCTCCC ATACCACCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49781230	NES12400968	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31839774					SNP	T	T	T	T	T	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781230	NES12400968	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98502649 () rs orientation: forward

Symbol	Name	Function Class
Gm14808	predicted gene 14808	within coordinates
Gm30798	predicted gene, 30798	1313 bp downstream
Rr8878	regulatory region 8878	within coordinates
Tssr5651	transcription start site region 5651	8 bp upstream