rs31839775 SNP Detail

Summary

• ID
  rs31839775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98501781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAGGTCA CAGAGCAAGT
  GAAGCAGAGC TATCTGGGGC TTCACCTCAC CTCTCTTGCA GAGCCACTTT CTATAGGAGC
  TGCCGGGGTG GGGAGTGGGG AATGTCAAGG TATGATATCC ACGCAAGTGC TCGGCACTCG
  GCCAGCCCAC CCAGGGAGGA CCATCTCTTG GCTCTGGGCT CCAGGCACTG AGCAGGCCTT
  R
  AGGCAGTACC AGAAGACAGG CCAGATTCTC TTGGTCAGGA GCAAGCTGAA ACCTGGGCTG
  GTGGCCAAGG GGACTCAAAC CCCCGAGACT GCTTGAGAGC GGAGACTAAG TCACTTCAGG
  ATTCCTCGGA GCCTCAAAGG GGAAGTCCTC AATAAATACA GGAAGGAAGC AGCCTTATGG
  AAGGTCTTCT ATGGCTGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49781231	NES12400967	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31839775					SNP	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781231	NES12400967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98501781 () rs orientation: forward

Symbol	Name	Function Class
Gm14808	predicted gene 14808	826 bp upstream
Gm30798	predicted gene, 30798	445 bp downstream
Rr8877	regulatory region 8877	1380 bp distal
Rr8878	regulatory region 8878	619 bp proximal
Tssr5651	transcription start site region 5651	876 bp upstream