rs31839777 SNP Detail

Summary

• ID
  rs31839777
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98501269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGGAGA GTGGGAACAC
  GTGAGCTACA AACTCACCAT TGAGGATGTT GATATTTAAA GTGAGAGGTG CCCGGTGTTC
  TATTAGTATT GTTATTTAGA ATACGGAGTG TGACAGGGCA GGACAATAAG CTGCCTTTCT
  TGATACCCAG AGACAAGCCT GCCTGGGAGA CAGAGGCTTG CAGCTGGAGA CTGGCTGCCC
  K
  CTGTTTACAA TCATCTTGTC ATAAAGCTAG CAGGAGCGGT CATGATTAAA GGTGCATTGT
  CCGAGGATTC GAGTGCCTGG CTCTGTTGCT TCCTACTGGG TGACCTTAAG AAGGCATTTC
  CCTTCTGACT CAGTTTCCTA AGCAAACATT TCCCTCTTTT CCTCAGTTTC CTTAACACAT
  TTGGGAAGCC TGTTATGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49781233	NES12401002	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31839777					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781233	NES12401002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98501269 () rs orientation: forward

Symbol	Name	Function Class
Gm14808	predicted gene 14808	1338 bp upstream
Gm30798	predicted gene, 30798	within coordinates
Rr8877	regulatory region 8877	868 bp distal
Rr8878	regulatory region 8878	1131 bp proximal
Tssr5651	transcription start site region 5651	1388 bp upstream