rs31839778 SNP Detail

Summary

• ID
  rs31839778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98500625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCACAAA CTCATCATGA
  ACTGACTTCA TCAAGGCCTC TCTCCACAGC CCTGCATGCT GTCCCTCCTG TGGGCTTCCC
  GTTTGGTAAA TGACCTCATC ATCTAGTCAC CCAATCCAAG GCTGCTTCCC ATCCCTGGTG
  GTTTCCTTTC CCAGCCTGGT CAGTTTGCTT TCAAACCTGT CTCATTTCTA CCTTTTCATA
  R
  CCAGCGCTCT ATTGTAACTT CCTCCTTCCC TCCCTCCCTC CCTCCCTCCC TCCCTCCCTC
  CCTTCCTCCC TTCCATCCCT TCACCTACCC ACTCATTCAA CCACTGGTCA TTCAACACCT
  GCCACATGCA TCCAACCAAC TCACACTTTC ACTGGAGGAG CCCCAGCATA TTGGCTTCAA
  GCAGTGACTT GCTTTTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49781234	NES12401062	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31839778					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781234	NES12401062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98500625 () rs orientation: forward

Symbol	Name	Function Class
Gm14808	predicted gene 14808	1982 bp upstream
Gm30798	predicted gene, 30798	within coordinates
Rr8877	regulatory region 8877	224 bp distal
Rr8878	regulatory region 8878	1775 bp proximal