rs31841690 SNP Detail

Summary

• ID
  rs31841690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98214250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCCTGA TGGGGCTAGT
  CTCCCCTCCT CTTCTCTTCC TCTACCTTGT CGGTAGGACC TCTGCTGGGC TTTCTCTTGG
  GGATATCTCT GCCTTCTCCC AAGAAGATCC TGGCTAAACT TCCACAGATG ACCTATGACC
  TCTGGGACCT GCCTTCACAC CAGCGTAAGA TGAGGCCTGT CACTTGAGCC CTGGCCATTC
  R
  TGATGCAGCA CAGGGTTAGA GACCCTTGAC TAAACACTGG GCAAGTGCTA GGCCTCCTGC
  AGAAGCCTAG CGGAGAAGTT TGGGCCAGAG GGAATCAAAG CAAGCCTGTT CCAAACCCAG
  GGTCCCATTC TTTGGACCCA GGGGCCTGTC TAATTAGGAG AGACAAAATT AATTTACTCT
  GCCCTTTCTT ATCTCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49781456	NES12412997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31841690					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781456	NES12412997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98214250 () rs orientation: forward

Symbol	Name	Function Class
Rr692640	regulatory region 692640	1627 bp proximal