rs31842841 SNP Detail

Summary

• ID
  rs31842841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165158535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACACTGGAA ACAGTACTTT CAATGAAATT ATGATTTTCC
  ATTGGGCTAA ATTCACAGCT ATTTTGGGGC ACATGGCCTG TGGGTAACCA GATGGACACA
  Y
  CTGTAAGAGG CTTGTGTACT TCTGTTTGTA AGATTTCTTA AAATTCAGTA TCTACTACAT
  TCCAGGAAGT GGCTAACCCT GAGATAACAA TGGTGACTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45076249	mCV23373766	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31842841					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165158535 () rs orientation: forward

Symbol	Name	Function Class
Dcaf6	DDB1 and CUL4 associated factor 6	within coordinates
Rr20301	regulatory region 20301	1934 bp distal
Rr25486	regulatory region 25486	1099 bp distal
Rr25487	regulatory region 25487	within coordinates
Tssr14767	transcription start site region 14767	1150 bp upstream