rs31843043 SNP Detail

Summary

• ID
  rs31843043
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156766434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACG CCCCTCCTCC ACGGCCACCA
  M
  CAGGCCCCTT TCTTCCTCCT CCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45075869	mCV23081930	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss320073082	CHEV_1_158868995	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31843043					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156766434 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	within coordinates
Cpgi904	CpG island 904	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	within coordinates
Tssr9581	transcription start site region 9581	793 bp upstream
Tssr14474	transcription start site region 14474	1022 bp upstream
Tssr14475	transcription start site region 14475	55 bp upstream
Tssr14476	transcription start site region 14476	11 bp upstream
Tssr14477	transcription start site region 14477	669 bp downstream
Tssr14478	transcription start site region 14478	689 bp downstream
Tssr14479	transcription start site region 14479	764 bp downstream
Tssr14480	transcription start site region 14480	1162 bp downstream