rs31843043 SNP Detail

Summary

• ID
  rs31843043
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156766434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACG CCCCTCCTCC ACGGCCACCA
  M
  CAGGCCCCTT TCTTCCTCCT CCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45075869	mCV23081930	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss320073082	CHEV_1_158868995	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31843043					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156766434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			within coordinates
Rr421284	regulatory region 421284			1077 bp distal
Rr421285	regulatory region 421285			57 bp distal
Rr421286	regulatory region 421286			within coordinates
Rr421287	regulatory region 421287			106 bp proximal
Rr421288	regulatory region 421288			438 bp proximal
Rr421289	regulatory region 421289			513 bp proximal
Rr421290	regulatory region 421290			899 bp proximal
Rr421291	regulatory region 421291			955 bp proximal
Rr421292	regulatory region 421292			1937 bp proximal
Tssr9581	transcription start site region 9581			793 bp upstream
Tssr14474	transcription start site region 14474			1022 bp upstream
Tssr14475	transcription start site region 14475			55 bp upstream
Tssr14476	transcription start site region 14476			11 bp upstream
Tssr14477	transcription start site region 14477			669 bp downstream
Tssr14478	transcription start site region 14478			689 bp downstream
Tssr14479	transcription start site region 14479			764 bp downstream
Tssr14480	transcription start site region 14480			1162 bp downstream