rs31843311 SNP Detail

Summary

• ID
  rs31843311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98181126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGTAAGC AGCCCACTCC
  AGGGCCTCTG GGAACGTGGT GGTTTTCACT CACAGCCACT CCAGGGGTGA GATCGACCTG
  AGCAAGGGAC CAGGCCAGAA CACAGGTTCC TCATTTGCTT AGGTGTCAGG GCGGCTCAGG
  ACCTAGCGCC CCGGGGCGAG TGGCAGCATC TGTATATCTT CTCCAGCTTC TCCCATTTTC
  R
  TTTGTCTTTC TTCCCTGTCT GTTTGCCTCC CTGTCTTTCT CTTTGCCGTC TCTTCTTGCA
  CACTCCCCCC CCCCCCCCAT TTCTCTCTGC CGGGGAGGTA GAAAGGCGGG CGCTGCTTCC
  AGGCTCACAA AGGCGGCGGG TGGAGAAGGG CGGAGTGGAA GAGGGTTTGT TTGAGAAGGG
  GGTTCGATCC AGTGCCCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49781477	NES12397315	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31843311					SNP	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781477	NES12397315	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98181126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22850	CpG island 22850	276 bp distal
Efnb1	ephrin B1	within coordinates
Rr406150	regulatory region 406150	1374 bp downstream
Rr692629	regulatory region 692629	1380 bp distal
Rr692630	regulatory region 692630	within coordinates
Tssr161599	transcription start site region 161599	1436 bp downstream
Tssr161600	transcription start site region 161600	1413 bp downstream
Tssr161601	transcription start site region 161601	1382 bp downstream
Tssr161602	transcription start site region 161602	1337 bp downstream
Tssr163842	transcription start site region 163842	1570 bp upstream