rs31843312 SNP Detail

Summary

• ID
  rs31843312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98178482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTCATA AATGGCAAAG
  CCCCTAAAGG ATGGGGCTCA GACCGTTATC TCCATAGAGA AGCAACAAGA AGGAACTGGA
  ATTTGGTTCT TTGGTCCTTC TTACCTTGCC TAGTAAGTCT AAAGTTAGAA CCCGATTCAT
  TACAAAAAGA AAAGAGGAGG CAGCGAGGAG GAGAAAAAGG AGGGGCGCGA ATATAGGAAG
  Y
  CTTTCTAACC TTTGAAGTCC CCAAGCCCAG ATCTTTCCCA CCTTTCTTAC ATGAGTGGCC
  AGTGGCCGGC TCTTGCTACT GCCATGCCTA CCTCTGAGCG CTTTGAGTGC CAGACTTGCT
  CAGCAGGCTC TAGGTGGGAG GCCTCCGCTT ATCCCGGGAG CCCGCAAGTC TATAGAAGGC
  CAGCAGGGGG AGACATTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49781478	NES12397314	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31843312					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781478	NES12397314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98178482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22850	CpG island 22850	814 bp proximal
Efnb1	ephrin B1	1254 bp upstream
Rr406150	regulatory region 406150	969 bp upstream
Tssr161599	transcription start site region 161599	1197 bp upstream
Tssr161600	transcription start site region 161600	1214 bp upstream
Tssr161601	transcription start site region 161601	1243 bp upstream
Tssr161602	transcription start site region 161602	1304 bp upstream
Tssr163842	transcription start site region 163842	1070 bp downstream