rs31843947 SNP Detail

Summary

• ID
  rs31843947
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148374220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA GCTCCACCCA ACATATCCCA
  K
  GGGAAGGCAG AGAAAGAGGA GCCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45577150	mCV24938590	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss148000327	ENSMUSSNP4475693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321418894	CHEV_4_147663872	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31843947					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148374220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	981 bp distal
Disp3	dispatched RND transporter family member 3	1798 bp upstream
Gm68159	predicted gene, 68159	839 bp downstream
Rr604639	regulatory region 604639	1809 bp distal
Rr604640	regulatory region 604640	1486 bp distal
Rr604641	regulatory region 604641	1588 bp distal
Rr604642	regulatory region 604642	929 bp distal
Rr604643	regulatory region 604643	1445 bp distal
Rr604644	regulatory region 604644	1310 bp distal
Rr604645	regulatory region 604645	1165 bp distal
Rr604646	regulatory region 604646	1355 bp proximal
Rr604647	regulatory region 604647	1964 bp proximal
Tssr44603	transcription start site region 44603	1809 bp upstream