rs31844297 SNP Detail

Summary

• ID
  rs31844297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75105093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagtgtttt accacagcaa cagCACcagg
  gcatgcactt agcacagtgc tcaatggatg tttgttaaat aactgaatGG AGTACACGCA
  AAATCCCACT GTGAGACCAA GAATCCAGAG AGCCTAAACC TCAGCTCCAC TACTGAGAGA
  Y
  TCCTTTCCCT CCACCCAGCC TACCTGTGTT GAGCAGGACT GGGGCTTCCC TGAGCCACCT
  TGGCAAAAGC AAGGCCATGA AGATGGAGAA GCCCACGATG AAGACATTTC GCCCAGAGTC
  AATGTCAGCC AGGTGAAAGC TGGAGAATCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45076859	mCV23611668	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss144691862	ENSMUSSNP3805194	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss319795821	CHEV_1_75125023	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31844297					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75105093 () rs orientation: forward

Symbol	Name	Function Class
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	within coordinates
Tssr7483	transcription start site region 7483	101 bp upstream
Tssr12338	transcription start site region 12338	128 bp downstream
Tssr12339	transcription start site region 12339	152 bp downstream
Tssr12340	transcription start site region 12340	194 bp downstream