rs31844444 SNP Detail

Summary

• ID
  rs31844444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82984636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAGAGCAA TGGGTGAAAA TGTCCCTCAG GGCCCCTTAG
  ATTGGAGTGG GAAGGGGGAG GCCGACGAGT GCTCCCACTC GCTTACTTGA GCTGGTGGAG
  Y
  GGACGCTCAT CGCCCTCTCC CAGGCTCAGT GGGCAGCACT GGGATCTAGC AGAGCCAGAC
  TCGGGGCTCC TGATGGCCGC TGAGTCCTAG GCTGCTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39331414	mCV22803369	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T		C
ss51727794	NES14564627	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T		C	C	T	T	T	T	C
ss148234870	ENSMUSSNP645779	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31844444					SNP	C	C	T	T	T	T	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727794	NES14564627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82984636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	within coordinates
Gm17206	predicted gene 17206	1637 bp downstream
Rr308146	regulatory region 308146	1565 bp proximal
Rr312184	regulatory region 312184	within coordinates
Rr404540	regulatory region 404540	115 bp downstream
Serhl	serine hydrolase-like	within coordinates
Tssr132408	transcription start site region 132408	225 bp downstream
Tssr132409	transcription start site region 132409	132 bp downstream
Tssr132410	transcription start site region 132410	117 bp downstream