rs31844893 SNP Detail

Summary

• ID
  rs31844893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTAGTGGG ATCAAAACGA GCTATTTCGG GCCCCGGCGC
  GCAGCCCCCG GGGGCCAACC TGGAGTGTTC ATGCTCATGC CCCCTGGCCG CTGAGCACCC
  S
  AGGCTGAGTC AGAGGCACAG AATTAGGCCC GACCTACTCT GGGGTAGGGT CTGTTCTGTG
  TCCTCCTGAC TGCCTGGCAT GGGTGCAGCA TTCTCCAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46074770	mCV25394923	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss148682292	ENSMUSSNP6987788	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
ss322135209	CHEV_7_31337845	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31844893					SNP	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	175 bp distal
Cpgi18809	CpG island 18809	365 bp proximal
Cpgi18810	CpG island 18810	1400 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Mir9769	microRNA 9769	2 bp upstream
Proser3	proline and serine rich 3	527 bp upstream
Rr400242	regulatory region 400242	334 bp downstream
Tssr65779	transcription start site region 65779	262 bp downstream
Tssr65780	transcription start site region 65780	437 bp upstream
Tssr65781	transcription start site region 65781	467 bp upstream
Tssr65782	transcription start site region 65782	1946 bp upstream
Tssr71787	transcription start site region 71787	510 bp upstream
Tssr71788	transcription start site region 71788	451 bp upstream
Tssr71789	transcription start site region 71789	1839 bp downstream
Tssr71790	transcription start site region 71790	1951 bp downstream