rs31845513 SNP Detail

Summary

• ID
  rs31845513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98086006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAGTTC CTTCCGACTA
  CTAACTATGT ATCTCACAGA AGCAGTCTCC TGGACTTACT ATAAATTATC CTGGACAAGT
  CACTTAAACC CTCTTGTGCA CGTAGCATTT AGATTTGAAG CCTGCATGCA GTGCCAGACA
  CATTCAGAAC TCAATAAATA CAGGTCAGCG TGGCCATCTC ACTGTTTCAA GCTCTGCTCT
  Y
  TCAAAGCTCT GCCCTGGGCC CTGGGTTTTT GCCTCCAGCT GAGTGACCTG AGGGAAAGGC
  AGAGGCTCAG GGCATTGGAG GAGCTGGCTG GCAGAGCCCC GCCCACCCCA TTTGGACCGC
  TTTTGGGGAG GAGGCGGGTT GGGGAGGGAC GGGACTATGC CCTCATTGGT CTGGGGACCT
  GTAGGTGGGC GGAGCACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49781580	NES12398078	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31845513					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781580	NES12398078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98086006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	200 bp proximal
Rr692609	regulatory region 692609	within coordinates
Rr692610	regulatory region 692610	192 bp proximal
Stard8	StAR related lipid transfer domain containing 8	within coordinates
Tssr161595	transcription start site region 161595	204 bp upstream
Tssr161596	transcription start site region 161596	220 bp upstream
Tssr161597	transcription start site region 161597	589 bp upstream
Tssr161598	transcription start site region 161598	1603 bp upstream