rs31845740 SNP Detail

Summary

• ID
  rs31845740
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34552684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TAGCAACAAT AATCATAGGG
  K
  TGGGATCATC ACTGCATGAG GTACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45577628	mCV23153967	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss146173206	ENSMUSSNP7031192	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321074932	CHEV_4_34499933	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31845740					SNP	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34552684 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	within coordinates
Cpgi14119	CpG island 14119	977 bp distal
Gm68522	predicted gene, 68522	1863 bp downstream
Rr100806	regulatory region 100806	within coordinates
Tssr36767	transcription start site region 36767	1996 bp downstream
Tssr36768	transcription start site region 36768	1768 bp downstream
Tssr36769	transcription start site region 36769	1755 bp downstream
Tssr36770	transcription start site region 36770	1739 bp downstream
Tssr41190	transcription start site region 41190	1237 bp upstream