rs31846124 SNP Detail

Summary

• ID
  rs31846124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:98084597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGAAAA TAAAGTGGGT
  GGCACCTGAG GAATGGAGTG ACACCGGAAG TTATTCACTA GTCTCCACGT ACCTGTGCAC
  ACTTGTATAT AACCACTCAC ACATGTGCAC CTGGAGACAC ACACACACAC ACACACACTG
  GTATTTCAGA ACCAAAACTA TCTTAATCCA ATTAGAACAA TCTACAAAAT TACAGGTGGT
  R
  GCACAAACCT GTAACATTTA GGAGATTGAG GCTTTTGTTT TTTTTTTACT TTGATGGTAA
  CCTGGGTTCA TATAGAGATC TTGTCTAAAA AATAACATCT ATTAAATGTT AAATTGGGGT
  TTGCATTATT CATATGCTTA AAAATTCTTC ATGGTTATCC CTTAGTGACC TTTAACATTT
  TGTCACCCAC TAGTGAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49781581	NES12398069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31846124					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781581	NES12398069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98084597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	1609 bp proximal
Rr692609	regulatory region 692609	1269 bp proximal
Rr692610	regulatory region 692610	1601 bp proximal
Stard8	StAR related lipid transfer domain containing 8	Intron
Tssr161595	transcription start site region 161595	1613 bp upstream
Tssr161596	transcription start site region 161596	1629 bp upstream
Tssr161597	transcription start site region 161597	1998 bp upstream