rs31846648 SNP Detail

Summary

• ID
  rs31846648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:97725390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACGATCA TTATGTGTAA
  GATTTTTCAA TTGTAAAACT GTAGTTTTGG GGCACAAGTT TTATATTGTA AACTTAATAA
  ATATGGTTTC TAAATACGTC TTTAAAAGTC TATTCTGAGT CACACAGCAT TGTTTTGGAA
  AGCTAGGAAT AATCTGAGCA CACAGTGTTT ACAATGTATT TAATTGGAAA AATAAGTTGT
  R
  GAGTAACTAA AAAAAGAAAT GTGACTCCTT AACCAAAACA GGATTCTTTC CCTATTTAAA
  CATCTAAATA GAAAAACAAC AACAAATCAC TGTTACGTTA TGTTCAACAT CCAGGCAAAG
  CAAAGAAAGT TTACTTCATT AGAGCAATTT GTTGAACTTT GCCTGAACCC TGTGTCCCAA
  GGAAACATTC ACAATGATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49781835	NES12402004	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31846648					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49781835	NES12402004	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:97725390 () rs orientation: forward

Symbol	Name	Function Class
Ophn1	oligophrenin 1	within coordinates
Rr5052	regulatory region 5052	811 bp proximal
Rr8080	regulatory region 8080	963 bp proximal