rs31848315 SNP Detail

Summary

• ID
  rs31848315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82983168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTGAGTG ACTGTACTCC GACAGAACTC AGTGAAGACC
  CTTATCTATC GAGAATCAAA GTGTGTTCTC CACCGATAGA TGCCACTGAT TGGACCCAAC
  W
  GAAGTGTTCT CAAAGGGCTG GGGATGTAGC TCAGTTGGTA GAATGTTTGC CTGGCATGCA
  TGCATCCACG TGTTTGACCC CCAGCAGTGC ATAAACCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39331889	mCV22803393	ABI	CRAMUS_MOUSE	f	SNP		T	A					T
ss51727800	NES14564656	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		A	A	A	A	A	A	T
ss148234845	ENSMUSSNP2081335	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31848315					SNP	T	T	A	A	A	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727800	NES14564656	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82983168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	884 bp proximal
Rr304679	regulatory region 304679	1968 bp distal
Rr310854	regulatory region 310854	1066 bp distal
Rr312184	regulatory region 312184	632 bp proximal
Rr404540	regulatory region 404540	1052 bp upstream
Serhl	serine hydrolase-like	1226 bp upstream
Tssr132408	transcription start site region 132408	1234 bp upstream
Tssr132409	transcription start site region 132409	1314 bp upstream
Tssr132410	transcription start site region 132410	1339 bp upstream