rs31848490 SNP Detail

Summary

• ID
  rs31848490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15876395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA CACACGTTCA TGTGATGATG
  R
  AAACCATCCT TGATCTCTCT TCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46075023	mCV27566920	ABI	CRAMUS_MOUSE	f	SNP	G	G		A		G
ss51880913	NES14893994	PERLEGEN	MM_PANEL2	f	SNP			G		G		G		G	A	G
ss148377755	ENSMUSSNP4732169	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				G
ss322108693	CHEV_7_16727819	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31848490					SNP	G	G	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880913	NES14893994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15876395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18356	CpG island 18356	1259 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates