rs31848826 SNP Detail

Summary

• ID
  rs31848826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48493908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATACTG ATGCCAATCA
  CTGTTCATGC TTGCATCAAT GCATTTCATA CATTATCGGT GATACTTACA GCAGCCCAAC
  ACAGTAAATT GTGCTGTTCC TAAGCTGGAA ATGAGAAAAC TATACAGAAA GCTAGATAGA
  TAGTTTGACC AAGATCACAC AACCAAAAAA TGGGAGAGCT ACATTTAAAA GGCTAATTAA
  Y
  TTGACCCTTA TACAAGCTTC TGCTATAACA TGTCTTCCAG GAGACAGACA TGGGTGAGCA
  ATTCCAGTGA CCAAGCATCT CATCTGGTGG GAACTGAGGT CTTATAGATC CATCATCTCT
  TTATGGGGCA TAGAAAGCAT TGATAAGAGG AGTCTTGGGG GCTTCAACTT GGTAACATAA
  GGGACAACCC AGGAATAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46074851	mCV25161949	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss48221986	NES11798565	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	C	T	C	C	T	C
ss149207722	ENSMUSSNP1038034	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31848826					SNP	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221986	NES11798565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48493908 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646924	regulatory region 646924	1423 bp distal
Rr646925	regulatory region 646925	808 bp proximal
Tssr72622	transcription start site region 72622	498 bp upstream
Tssr72623	transcription start site region 72623	486 bp upstream
Tssr72624	transcription start site region 72624	1051 bp downstream
Tssr72625	transcription start site region 72625	1078 bp downstream