rs31849115 SNP Detail

Summary

• ID
  rs31849115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128064921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCGAGG CCAGCGTGGT
  CTACAGAATG AGTTCCAGGA CAGCCAAGGC TATACACAGC AAATCCTATC TCGAAAAAGC
  CAAAAAAAAA AAAAATTAAT TTTTTTTTTA AAAAAGGAAA GGAAAGAACT TCAGAGAGCT
  TCAGAAATCT ACACAAGTGA AACAAAGGGG TCAGAAAAAA AAATAGGGAA GGGAAGAGGT
  R
  GGGAAGGCAC CAAGCTCAGC CTCAGCCATA CAGTTCCCAT CCACTTCCAA AAGGTAAGCC
  AAATGAAACG CAGGCAGTCC TATACCCAGA ACAAGCCCAC AACCCTTGTA AGCCTTAAAT
  CCAGGTTTGA CGCAGCAGTA ATTGCCCCAG CAGAAAAATT CAACAGCAGA GAGAATCTTA
  TCTTGTCACA CTGTATGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46075597	mCV24293546	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss145891506	ENSMUSSNP6863964	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31849115					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128064921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	959 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	1260 bp downstream
Rr656042	regulatory region 656042	1108 bp distal
Rr656043	regulatory region 656043	336 bp distal
Rr656044	regulatory region 656044	850 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1480 bp upstream
Tssr69425	transcription start site region 69425	1223 bp downstream
Tssr75111	transcription start site region 75111	1871 bp upstream
Tssr75112	transcription start site region 75112	1810 bp upstream
Tssr75113	transcription start site region 75113	1797 bp upstream
Tssr75114	transcription start site region 75114	1637 bp upstream
Tssr75115	transcription start site region 75115	1575 bp upstream
Tssr75116	transcription start site region 75116	1535 bp upstream