rs31849389 SNP Detail

Summary

• ID
  rs31849389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44840028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCGCCTG GCATGCACCA
  GATATAAATG TTAGAGATGA ACAGTTATAG ATAATTAAAG AAACTCATGC TTCCTAACAT
  ACGAAACTAA AGTATAGTGA GCCCAGAATA CTTGCAAGTG CGCGCACGCA CATGCACACA
  CACACACACA CACACAGTCT CAATATATAG CTTGGGCTGG CTTTGAATTT GTAATCCTCC
  Y
  GCTTTAGCAG GAAGGCAGGT ATGAGCCATC ATACCTCACC CTCATGCCCA CTGTAATAAC
  TAGACTTTGG TTCCTCCTTT TCTTTATTTC TTTTGCTTTC TTGTCTAACT CAGTCATTTT
  ATTAAAGCAA ATCTCCCATT TTGCCTGGAG CAACCCCAGT GTTTACCTAC TTATGACAAC
  TTATTTCCTT TAGTAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46075032	mCV27567972	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C	C
ss149131069	ENSMUSSNP3407956	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31849389					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44840028 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	within coordinates
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	1097 bp proximal
Tssr72334	transcription start site region 72334	1891 bp upstream
Tssr72335	transcription start site region 72335	1038 bp upstream
Tssr72336	transcription start site region 72336	954 bp upstream
Tssr72337	transcription start site region 72337	891 bp upstream
Tssr72338	transcription start site region 72338	795 bp upstream