rs31850115 SNP Detail

Summary

• ID
  rs31850115
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123559154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                AGCCCCA GCCGGGACTG ATACGGGAGG CCGAAGGGAA CGGTACGACC
  M
  CAAAGAAGCC CGGGAACAAA GAGTTGTCCA GAAACAGACG AAACTGAAGT GGAAGCGAGG
  GCGACAGAGC CATCACCATA AAGTAAACCA GGCCAAGGAG CAGAGCCTGA GAAATGACAA
  CTGAGAGAGC GATGAAAACA CGATTCTGAC CGCACATGGG GGGAGGGCGT AAATCCAAGG
  GGGGAGACCC AATAGGATTA CTAAAGTGTG ACAGCCCTCT CCACACGGCG ACTTAGATCA
  AAAGGGAGAA ATGTGGGAAC CTGAGGCTGC ACCAGGACTG GCAGGGAACA AAGGAAGGAT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45577677	mCV23036671	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs31850115					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123559154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14755	CpG island 14755	within coordinates
Gm12925	predicted gene 12925	520 bp upstream
Macf1	microtubule-actin crosslinking factor 1	within coordinates
Rr377112	regulatory region 377112	1254 bp downstream
Rr377113	regulatory region 377113	419 bp upstream
Tssr38865	transcription start site region 38865	529 bp downstream
Tssr43288	transcription start site region 43288	556 bp upstream
Tssr43289	transcription start site region 43289	107 bp downstream
Tssr43290	transcription start site region 43290	140 bp downstream