rs31850801 SNP Detail

Summary

• ID
  rs31850801
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28164409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGTTTA TGGAAAATGA
  AGAACTTAAG GTGGGGTCTT TTGGGGAGGG TGGGACCTAT GCCTGAAGTC CAGATGGCAG
  GGACCTTCTT GGAGAGGGTC TCAGGACCAG CAGGCAGCAG GCCTGTGGGG CTCTGACAGG
  TAAGCACGCT CGGAGACAGG GCATGGCTTT TTGGAGGAGG TGGAACTTGT TCTGCATGGT
  M
  TCAAGCAGAG GAAGGGGCGG TGCTTGTCTC TGGTGAGCCA CTAAGAGCCT TGGCAAGAGA
  GGAGAGCTTG CGCGGTTGGT TGCAGCGCAT GCCAGTCAGG GCACACTCCA CACTCTGGAT
  TCCCTGAGGC TGGAAGTAGC CCAAACAGAC TGTGCCAAGA TACGCTCATC AAAAGACACC
  TAAGTCTGGG AGGGAATGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss46074877	mCV22858787	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss148633019	ENSMUSSNP209779	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs31850801					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28164409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	1579 bp proximal
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	within coordinates
Rr644282	regulatory region 644282	within coordinates
Rr644283	regulatory region 644283	2000 bp proximal