rs31852270 SNP Detail

Summary

• ID
  rs31852270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19190893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTTGCC TGACAACTAA
  TGACAGCTGT AGTTGGGAAC ACACCGCCTT CTGACTCAGA CCCACAGTCA TGCCAGCAAC
  CGAAAGCCAT GAGCGCCGCC TATGTACCAT CCATCCTTCA CCCACATGTC TCCGGTAATT
  CTTTGCGGGA CTCAAGTTGT TACCCCCCAC CCCTCCAACA CACACATACT TTCCAAGGCC
  R
  GAATCAGGCT CAGAGAAGGG GAGCCAATAG CCTGAAGACA CAATGCAATC TGGCACATGG
  AGGCAGCATT CGAACCCAAG ACTCTGGAAC CATGTACCTC TCTGGCCTGG TTGAAACCTC
  CAACTTGAAA CCTAAGCCAA CAGGGGAGAG GGGCAGAGGG GGCGTTATCT GATATCTACC
  ATATGCATTA GAAACACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46076202	mCV22659339	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148476667	ENSMUSSNP4908985	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31852270					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19190893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	797 bp proximal
Mark4	MAP/microtubule affinity regulating kinase 4	within coordinates
Rr400149	regulatory region 400149	1788 bp upstream
Rr643146	regulatory region 643146	487 bp proximal
Rr643147	regulatory region 643147	1843 bp proximal
Tssr64858	transcription start site region 64858	1962 bp upstream
Tssr70918	transcription start site region 70918	1704 bp downstream
Tssr70919	transcription start site region 70919	1760 bp downstream
Tssr70920	transcription start site region 70920	1780 bp downstream
Tssr70921	transcription start site region 70921	1811 bp downstream
Tssr70922	transcription start site region 70922	1833 bp downstream