rs31852506 SNP Detail

Summary

• ID
  rs31852506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127385971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT TGATCTAAAA GGAGATCACA
  Y
  GGCCCACCAG GATTCTCTGT TGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45077288	mCV23272900	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145443474	ENSMUSSNP7245012	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31852506					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127385971 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr11973	regulatory region 11973	630 bp proximal
Rr19047	regulatory region 19047	971 bp distal
Rr30263	regulatory region 30263	within coordinates
Rr396245	regulatory region 396245	783 bp upstream