rs31852603 SNP Detail

Summary

• ID
  rs31852603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79975464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGCAAAG AGGTCACCCC GCTGGCTGGG AGCGCGCCCC
  ACACCGGGAC CCCAAGAAGC ACCCGCTTTC TGAGCGCGAG CTTCGGGGAG CTGCACCTGC
  Y
  GTGCACGGAC GCCCCCTGGC GGGAGCCCCG GCAAGCACTA GCCGAGCGCA GGGGAGGGGG
  CGGGGGCGCC GCGCACGCGC ACGGGTCGGC GGCGCGCGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39332585	mCV22873947	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148213538	ENSMUSSNP337073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31852603					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79975464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	within coordinates
Gm31134	predicted gene, 31134	within coordinates
Syngr1	synaptogyrin 1	73 bp upstream
Tssr132156	transcription start site region 132156	56 bp downstream
Tssr132157	transcription start site region 132157	57 bp upstream
Tssr135418	transcription start site region 135418	559 bp downstream