rs31854825 SNP Detail

Summary

• ID
  rs31854825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21483459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGTGTG CATGTCCAGG
  TGAAGTGCCC ATGGACGTGT GTAGGCGGGA GGTTGACTGT AATGTCTTCC TTGCTCACTT
  TCTATGTTAG CTTTTTTTTT TTTTTTTTTT TTTTTGAGAC AGGATTGCTC ACTGGACATA
  GATCTCATTA ATGCAGCTAA TAAATCAAAA GATTCAGCTA CAAAGGGCAA AGAGATAGAA
  Y
  GCTCCATCAT TTCTCTAAGT TTAAGTAAGA TTGGTATGCA AATGAATCAG TATGTGACTA
  TATGTGTGTA CTATGTATGT GTGTTTGTGT GTGTACCTTT GCATGGTGTG TGTGTGGTTT
  GCAATGGCCT TTGGAAGATT ACATTTCTTA GCTAAGAGCA AGTGGATCTC TTCAATTAAT
  TTTAAAGTTC TACTTTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47596725	NES10289776	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31854825					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47596725	NES10289776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21483459 () rs orientation: forward

Symbol	Name	Function Class
Gm43214	predicted gene 43214	809 bp downstream
Gsap	gamma-secretase activating protein	within coordinates
Rr607882	regulatory region 607882	570 bp distal
Tssr45322	transcription start site region 45322	83 bp downstream
Tssr45323	transcription start site region 45323	1162 bp upstream