rs31856524 SNP Detail

Summary

• ID
  rs31856524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:87345016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAGAAA TTGAACCCAT
  CCCTTCTGGA AAAGGGGTTG CTCTCAAGCA TTGCTCTCAA CAGCTAAGCC ATCTCTCCAG
  CTCCAGGTTC ATCTGTTCTT TTGCTGTATT TATCTGCCCT GAAAGCTTTG TCCTGAGTTT
  TGGAGTTATG TAACCCTGTT TCACTCTACA TATGGCTGGT TTGATCCAGG CACTCTGTGT
  Y
  TCTGTGTAAG GGATGGAGTC TCTTTGTTAA TATGTTTTCC TGGAAGACTG ACTAGGACTC
  TGTTTAGTAT ATAAACTGAG TGGTTGCCAG GTCTTTTGCC CTAGATCTGG TGTTTCTCCG
  TGATTCCCAT TTCTACCCTA GCCACTGCTC AGGGTCCCAG AGGCTTGTCC TCTGGTTTTC
  AATGTGAGTT GGCTAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48096244	NES12077752	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31856524					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48096244	NES12077752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:87345016 () rs orientation: forward

Symbol	Name	Function Class
D15Mit96	DNA segment, Chr 15, Massachusetts Institute of Technology 96	637 bp proximal
Gm35422	predicted gene, 35422	within coordinates
Rr507592	regulatory region 507592	1573 bp distal