rs31856526 SNP Detail

Summary

• ID
  rs31856526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:87345136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCTTTG TCCTGAGTTT
  TGGAGTTATG TAACCCTGTT TCACTCTACA TATGGCTGGT TTGATCCAGG CACTCTGTGT
  TTCTGTGTAA GGGATGGAGT CTCTTTGTTA ATATGTTTTC CTGGAAGACT GACTAGGACT
  CTGTTTAGTA TATAAACTGA GTGGTTGCCA GGTCTTTTGC CCTAGATCTG GTGTTTCTCC
  R
  TGATTCCCAT TTCTACCCTA GCCACTGCTC AGGGTCCCAG AGGCTTGTCC TCTGGTTTTC
  AATGTGAGTT GGCTAGTGAG GCTTCTGAGG GGACAGTCTT CGCAGGTCTA ATTCCTCTAA
  ACCAAATGCC CTACACCCTT CACTCTCGAG CAGCCCACAC CAAATCAACA CCATCATTTC
  TATGTCCTTC CTAGGCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39365950	mCV25419739	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss48096246	NES12077753	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss148311453	ENSMUSSNP3041313	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31856526					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48096246	NES12077753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:87345136 () rs orientation: forward

Symbol	Name	Function Class
D15Mit96	DNA segment, Chr 15, Massachusetts Institute of Technology 96	517 bp proximal
Gm35422	predicted gene, 35422	within coordinates
Rr507592	regulatory region 507592	1693 bp distal