rs31857263 SNP Detail

Summary

• ID
  rs31857263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153364929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTA TGGAAACTTC CAAAGGAGAA
  M
  GGTGTTTAAA ACTCCTCAGG CCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45078227	mCV25366642	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss145743794	ENSMUSSNP5070242	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31857263					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153364929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	1288 bp distal
Dhx9	DExH-box helicase 9	1523 bp upstream
Rr396394	regulatory region 396394	1362 bp downstream
Rr396395	regulatory region 396395	within coordinates
Rr420682	regulatory region 420682	1586 bp distal
Rr420684	regulatory region 420684	1648 bp distal
Rr420685	regulatory region 420685	1033 bp distal
Rr420686	regulatory region 420686	within coordinates
Tssr9460	transcription start site region 9460	1360 bp downstream
Tssr14270	transcription start site region 14270	1521 bp upstream
Tssr14271	transcription start site region 14271	1502 bp upstream
Tssr14272	transcription start site region 14272	1493 bp upstream