rs31857481 SNP Detail

Summary

• ID
  rs31857481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:83921435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGGCTAAAG AGAGAACTCC TGAGTTCAGA GTGGAGCGTC TAAGTGTGCA CGCCCTCTTG
  TCGGCTGAAT CTACAATCTG GAAATCAGAG AGGCTGGGGT AGGGCAAGCC ATGTGGGAGC
  CAGAAGCCTG CAGCATAGGA AGCATGGAGT TGGGGGCGGG GCAAGGAAAG AAGGGATATC
  TAGGAAACCC CTATTTTGCT GGAAGTGGGA TTCTCCATTC CAGAGCTACT AGCAGGGCAC
  CTCTCACTAT CGGCCCAGTT CCTGGTGCCA AGAACACCAC ATTGGGCAAA CAGGTCCAGC
  Y
  TACCATCTGG AGGGGACAGG ACAGACAAGG GCAAGCAGCC AGTATGTCAC CGGGTAGTGA
  CAGATGGTGG TGAACGCAGC AAGAGTGGCA AGAGATCAGC AGAGTGTGGG ACGGTGCCAC
  CAAGGGCTGG TCTAGCCAGA CAGGTGGTCT AGGATCCCTC CTCAGGGAGT TTGGGAGCCA
  AGACCAAAAT GTTAGAAATG AACCACCAGT TAGCAAGCAG AGGTGACTAC ATTCCAAACA
  TAGACCAGAG TGGCCTTGTA AGAGCTTTGT ATGGGAGCAA CCTGAGTCTG TCTGAAAGAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39332760	mCV25424134	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31857481					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:83921435 () rs orientation: forward

Symbol	Name	Function Class
Efcab6	EF-hand calcium binding domain 6	within coordinates
Rr308220	regulatory region 308220	34 bp distal
Rr308221	regulatory region 308221	165 bp proximal
Rr308222	regulatory region 308222	566 bp proximal