rs31857580 SNP Detail

Summary

• ID
  rs31857580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:51510628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGCCTTT TCTTTTTAGG GTGAATCTAG TTTTAGTATT
  CTTACAAATT AGCTTTATAC GAAACAAGCT GAAAATTCGA TGGCTTTAAG AATTCTTTCA
  M
  GATTAATGAT GTAGCTCAGT GGTGAACACT AACATAGGCA GGGTCCTGGG TCCATTACCA
  GAACAAAAAC AATCTCTATA TAATACATAT TATATAATA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss46076401	mCV24989957	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss149257809	ENSMUSSNP6274062	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31857580					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:51510628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19159	CpG island 19159	313 bp proximal
Fancf	Fanconi anemia, complementation group F	within coordinates
Gas2	growth arrest specific 2	1135 bp upstream
Gm45235	predicted gene 45235	831 bp downstream
Rr647289	regulatory region 647289	1377 bp proximal
Tssr2273	transcription start site region 2273	925 bp upstream
Tssr66888	transcription start site region 66888	1126 bp upstream
Tssr72647	transcription start site region 72647	1336 bp downstream