rs31858026 SNP Detail

Summary

• ID
  rs31858026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28167623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CGGAGCCGGG ACCCTCCGCC
  R
  CAGCAGAATT AAACTTTTTT CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46076897	mCV22858976	ABI	CRAMUS_MOUSE	f	SNP		G	A				A
ss51887027	NES14904577	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		A	G	A	G	A	G	G
ss148633036	ENSMUSSNP6399744	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31858026					SNP	G	G	A	A	A	A	A	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887027	NES14904577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28167623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	241 bp distal
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	within coordinates
Rr644283	regulatory region 644283	1193 bp distal
Rr644284	regulatory region 644284	1076 bp distal
Tssr65486	transcription start site region 65486	296 bp downstream