rs31858116 SNP Detail

Summary

• ID
  rs31858116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154977460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCCAGTG CTGGGACTAA AGTTGTGCAT CACTATTCCC
  ACTGAGCATT CTGATTTTAT TAAAACAAAA ACAAAGAACA TCAGTTCTAT TCCTACCCAA
  R
  TTTTCTGATA AACCTGGAAA TGGTAGGGTT TTCAGATAGT CCTAATAAGG CTCCGAAGCA
  TCTTGGAAGG GCCAAGGCCT CAGGCCTTAC CAGACTTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45078231	mCV25211261	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss145775356	ENSMUSSNP4639634	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31858116					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154977460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	1858 bp distal
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	within coordinates
Rr28750	regulatory region 28750	1659 bp distal
Rr396412	regulatory region 396412	1840 bp downstream