rs31858154 SNP Detail

Summary

• ID
  rs31858154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45108736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGATCAAA AAAGAAGCCC TGCGGGAGGT TACAAATACG
  AGTTAACGGA ACGCGGTGGC TCGGCTCACA CTGTAAACTT CAATCGCAAC ACTCAAGAGG
  Y
  AGAGGCAGTA CGTGTGAGAT TTCGAGGGCA GCCCGGTCTG CCCAGCGAGT TCCAGTCAGA
  CAAAACTACT ATGTACACAG CGCGCAGGGA GAGGGAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46076695	mCV22696577	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31858154					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45108736 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19060	CpG island 19060			within coordinates
Cpgi19061	CpG island 19061			512 bp proximal
Ftl1	ferritin light polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm10252	predicted gene 10252			157 bp upstream
Gm56125	predicted gene, 56125			1115 bp upstream
Gm73429	predicted gene, 73429			870 bp downstream
Gm73431	predicted gene, 73431			1697 bp upstream
Rr380754	regulatory region 380754			23 bp upstream
Rr646449	regulatory region 646449			1353 bp distal
Rr646450	regulatory region 646450			329 bp proximal
Rr646451	regulatory region 646451			776 bp proximal
Rr646452	regulatory region 646452			1207 bp proximal
Rr646453	regulatory region 646453			1708 bp proximal
Tssr66539	transcription start site region 66539			1226 bp downstream
Tssr66540	transcription start site region 66540			1122 bp downstream
Tssr66541	transcription start site region 66541			349 bp upstream
Tssr66542	transcription start site region 66542			1752 bp upstream
Tssr72390	transcription start site region 72390			1110 bp upstream
Tssr72391	transcription start site region 72391			1088 bp upstream
Tssr72392	transcription start site region 72392			964 bp upstream
Tssr72393	transcription start site region 72393			899 bp upstream
Tssr72394	transcription start site region 72394			753 bp upstream
Tssr72395	transcription start site region 72395			87 bp downstream
Tssr72396	transcription start site region 72396			119 bp downstream
Tssr72397	transcription start site region 72397			376 bp downstream
Tssr72398	transcription start site region 72398			527 bp downstream
Tssr72399	transcription start site region 72399			1610 bp downstream
Tssr72400	transcription start site region 72400			1648 bp downstream