rs31858195 SNP Detail

Summary

• ID
  rs31858195
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25777406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGAACC TGGTATATTT
  GTAACCACTG AACCAGTGAG CTTCTTTTCC ACCTTCGAAC TTGATTATTA GAATGTGTGT
  GTGTGTGTGT GTGTGTGGTG CGTGAATTGA ACTCAGAACT TCATACATAC CATATGCTAA
  GCACTCACTC TTACCACTAA ATTACACCCT CAGATTCCAT AATTTTTTTC TCCTCATTTT
  K
  AAAAAAGTTT AATTTTGTTT TTAACTATGT GTCTGTGTAT GGGTGTGTGC ACATGAGTTC
  AGGTGGCTGG GGAGGTGAGA AGAGTAGTGG GACCCCTGGG AACTGGGAGG TATGGGTAAT
  CATGATTCAC TTGGTGTGGG TGCTAGGAGT CAAATTCGGG TCCCCTGGAA GAACAGCAAG
  TGTTCCTAAC CACTGAGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss39333342	mCV22644401	ABI	CRAMUS_MOUSE	f	SNP		G	T	T	T
ss51610567	NES14603650	PERLEGEN	MM_PANEL2	f	SNP	G					G	T	T	G
ss147356400	ENSMUSSNP2654871	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31858195					SNP	G	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51610567	NES14603650	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25777406 () rs orientation: forward

Symbol	Name	Function Class
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	923 bp downstream
Tssr130836	transcription start site region 130836	799 bp upstream