rs31858341 SNP Detail

Summary

• ID
  rs31858341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28166683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT CCTGGGGGAG CCCCGGCCCG
  R
  CCGAGGCCAC AACAACGCTA TTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46076377	mCV22858969	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss148633034	ENSMUSSNP4258766	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31858341					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28166683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	within coordinates
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	Coding-Synonymous
Rr644282	regulatory region 644282	1897 bp distal
Rr644283	regulatory region 644283	253 bp distal
Rr644284	regulatory region 644284	136 bp distal
Tssr65486	transcription start site region 65486	641 bp upstream