rs31858984 SNP Detail

Summary

• ID
  rs31858984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144980092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGCAGCCAG CACTCTTAAC GGCTAAGCCA TTTCTCCAGT CTTTAAGCTT CCTTTTTGGG
  ACAATGTCTT ATGCAGCCCA GGCTGGCCTG AAGCTTATTG TATAGCTAAG GATGACCTTG
  GAATCCCATG CTTCTGCCTC CGCTCCTTGG TGCTGGGATT ATAGGTGCTT ACCAGGTGTC
  CATTCATACC ATGTTAGGGA TGGGAGCCAG GACTACATGA GTGCTGGCAT GCCTGATATC
  ACTAAGTTAT ATCTCCACTC TCTCTCTGTC TCTGTCTCTC TATTTATTTA TCTATTCATT
  Y
  ATTCATTCAT TCATTCATTC ATTCATTCAT TCATTCATTC ATTCATTTAT TTTTCTGGTG
  CTTGGACTAG ACCCAGGCTC TGTAAACTCA AGGAAAGGAC CTGAGTCACA CCTCCAGCTC
  TCCCTCCTTT ATCAATTCTG CATCACTCCA GAATGCTCTC AATTCTGCAT CACTTCCTGG
  CTCCCCTCTC CAGCCTGGCC TCTCTCACCT GACTTCTAAG ACAGCCCTTC CCAGGACCAG
  CCTTCCTGCC CTCACTCCTC TAACTCCACA CCCATTTCTT TCTCCCCATC TTTTCTGGGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45578279	mCV22807763	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31858984					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144980092 () rs orientation: forward

Symbol	Name	Function Class
Rr398674	regulatory region 398674	1025 bp upstream
Rr604348	regulatory region 604348	806 bp proximal
Tssr40207	transcription start site region 40207	1208 bp upstream
Tssr44535	transcription start site region 44535	914 bp downstream