rs31859306 SNP Detail

Summary

• ID
  rs31859306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21484947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTCTAC CTTTTCCCTT
  TTTCTGGTGG TAAATGCCAT GGAAAACATC TGTGGCTTTT CTATATAAGT CTGTTTGTTC
  ATTTAGTGGC ATGGTGACTG CTACAGAGCC ATTGGCAAGG CTTTCTGAAC ATGAAGCTCT
  CAGTGGTGTC TGAGAGACTG ATGAACTGAC CCCACATCTT AAAGAGTCTC TGTCTGCTGA
  Y
  TTTAAGTTTC ACCTTCTAAA GTGCTGAGAG TTTCCATCCC AGCCTTCTTC CTCACTCTAC
  CAATCACACG CAGGCTTGCA CAGGACTTTG TGCTGACTCC TAGAGCCAAG AAGTCTACAG
  ATGATGCCTG TGTTGTGCCC CTGACTTTCC CAACTTGCAA CCAGTTGCAA CCAGTCATGC
  CTCTTGTGCC TCCCAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47596677	NES10289741	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31859306					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47596677	NES10289741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21484947 () rs orientation: forward

Symbol	Name	Function Class
Gm43214	predicted gene 43214	328 bp upstream
Gsap	gamma-secretase activating protein	within coordinates
Tssr45322	transcription start site region 45322	1571 bp downstream
Tssr45323	transcription start site region 45323	323 bp downstream